Publications
2023
Click here to see my most recent version of my publication list.
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Combrink, Leigh, Ian R. Humphreys, Quinn Washburn, Holly K. Arnold, Keaton Stagaman, Kristin D. Kasschau, Anna Jolles, Brianna R. Beechler, and Thomas J. Sharpton. "Best practice for wildlife gut microbiome research-a comprehensive review of methodology for 16S rRNA gene investigations." Frontiers in Microbiology 14: 224.
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Arnold, H. K., and Thomas J. Sharpton. Utilizing ecophylogenetics of the gut microbiome as a non invasive diagnostic test for inflammatory bowel disease and as a method to uncover conserved signatures of disease. In preparation.
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Arnold, Holly K., and Thomas J. Sharpton. Phylogenetic Diagnostics; Development and Application of Ecophylogenetics to Improve Inference in Microbiome Studies. In preparation.
2022
Arnold, Holly Kristin, Rhea Hanselmann, Sarah M. Duke, Thomas J. Sharpton, and Brianna R. Beechler. "Chronic clinical signs of upper respiratory tract disease associate with gut and respiratory microbiomes in a cohort of domestic felines." Plos one 17, no. 12 (2022): e0268730.
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Sharpton. T. J., Stagaman, Keaton, Sieler, Michaiel, Arnold, H. K., and Ed Davis. (2021). Phylogenetic integration reveals the zebrafish core microbiome and its sensitivity to environmental exposures. Toxics. In Press.
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Davis, Edward W., Carmen P. Wong, Holly K. Arnold, Kristin Kasschau, Christopher A. Gaulke, Thomas J. Sharpton, and Emily Ho. "Age and micronutrient effects on the microbiome in a mouse model of zinc depletion and supplementation." Plos one 17, no. 12 (2022): e0275352.
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2020
Couch, C. E.**, Arnold, H. K.**, Crowhurst, R. S., Jolles, A. E., Sharpton, T. J., Witczak, M. F., ... & Beechler, B. R. (2020). Bighorn sheep gut microbiomes associate with genetic and spatial structure across a metapopulation. Scientific reports, 10(1), 1-10.
** Authors contributed equally to this work
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Sharpton, T. J., Combrink, L., Arnold, H. K., Gaulke, C. A., & Kent, M. (2020). Harnessing the gut microbiome in the fight against anthelminthic drug resistance. Current Opinion in Microbiology, 53, 26-34.
2018
Gaulke, C. A., Arnold, H. K., Humphreys, I. R., Kembel, S. W., O’Dwyer, J. P., & Sharpton, T. J. (2018). Ecophylogenetics clarifies the evolutionary association between mammals and their gut microbiota. MBio, 9(5).
2015
Landeta C, Blazyk JL, Hatahet F, Meehan BM, Eser M, Myrick A, Bronstain L, Minami S, Arnold H, Ke N, Rubin EJ. Compounds targeting disulfide bond forming enzyme DsbB of Gram-negative bacteria. Nature chemical biology. 2015 Apr;11(4):292-8.
2014
Kembel, S. W., O’Connor, T. K., Arnold, H. K., Hubbell, S. P., Wright, S. J., & Green, J. L. (2014). Relationships between phyllosphere bacterial communities and plant functional traits in a neotropical forest. Proceedings of the National Academy of Sciences, 111(38), 13715-13720.
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Arnold, H., Masad, D., Pagani, G. A., Schmidt, J., & Stepanova, E. (2014). Network disruption and recovery: Co-evolution of defender and attacker in a dynamic game. In Complex Networks V (pp. 141-155). Springer, Cham.
2008
Burns, P. D., Wong, N., Arnold, H., Sirs, N., Romero, R., & Herickhoff, L. (2008). 61 PLANT EXTRACTS REDUCE DNA FRAGMENTATION IN FROZEN–THAWED STALLION SPERM. Reproduction, Fertility and Development, 21(1), 131-131.